References

[SBML_L3V2]

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core (Release 2) Authors: Michael Hucka, Frank T. Bergmann, Claudine Chaouiya, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Matthias König, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Rahuman Sheriff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson, and Fengkai Zhang

[SBML_fbc]

Olivier, B. G., & Bergmann, F. T. (2018). SBML Level 3 Package: Flux Balance Constraints version 2. Journal of Integrative Bioinformatics, 15(1), 20170082.

[SBML_groups]

Hucka, M., & Smith, L. P. (2016). SBML Level 3 package: Groups, Version 1 Release 1. Journal of Integrative Bioinformatics, 13(3), 290.

[SBML_distrib]

Smith, L. P., Moodie, S. L., Bergmann, F. T., Gillespie, C., Keating, S. M., König, M., Myers, C. J., Swat, M. J., Wilkinson, D. J., and Hucka, M. (2020). The Distributions Package for SBML Level 3. Retrieved from from COMBINE, https://identifiers.org/combine.specifications/ sbml.level-3.version-1.distrib.version-1.release-1

[libsbml]

Bornstein, B. J., Keating, S. M., Jouraku, A., and Hucka M. (2008) LibSBML: An API Library for SBML. Bioinformatics, 24(6):880–881, doi:10.1093/bioinformatics/btn051.

[MAPK]

Kholodenko BN (2000), Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades. Eur. J. Biochem; 267(6):1583-8